IL_7LS1_147

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_147 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2836

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7LS1|1|A2|U|3947
7LS1|1|A2|U|3948
7LS1|1|A2|G|3949
7LS1|1|A2|A|3950
*
7LS1|1|A2|U|3964
7LS1|1|A2|A|3965
7LS1|1|A2|C|3966
7LS1|1|A2|A|3967

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain K2

60S ribosomal protein L18

Chain N2

60S ribosomal protein L21

Chain V2

60S ribosomal protein L29

Chain i2

60S ribosomal protein L36a