IL_7LS1_171

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_171 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2933

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7LS1|1|A2|G|4395
7LS1|1|A2|A|4396
7LS1|1|A2|G|4397
7LS1|1|A2|C|4398
*
7LS1|1|A2|G|4600
7LS1|1|A2|A|4601
7LS1|1|A2|A|4602
7LS1|1|A2|C|4603

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain Z2

60S ribosomal protein L35a