IL_7LS1_213
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7LS1|1|m2|U|363, 7LS1|1|m2|C|401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_213 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.3552
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7LS1|1|m2|U|361
7LS1|1|m2|A|362
7LS1|1|m2|U|363
7LS1|1|m2|C|364
7LS1|1|m2|A|365
7LS1|1|m2|A|366
*
7LS1|1|m2|U|398
7LS1|1|m2|G|399
7LS1|1|m2|A|400
7LS1|1|m2|C|401
7LS1|1|m2|C|402
7LS1|1|m2|A|403
7LS1|1|m2|C|404
7LS1|1|m2|G|405
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain E3
- 40S ribosomal protein S23
- Chain u
- 40S ribosomal protein S8
- Chain w2
- 40S ribosomal protein S11
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