IL_7LS1_241

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7LS1|1|m2|G|935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_241 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1608

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7LS1|1|m2|C|933
7LS1|1|m2|G|934
7LS1|1|m2|G|935
7LS1|1|m2|G|936
7LS1|1|m2|G|937
*
7LS1|1|m2|C|1009
7LS1|1|m2|A|1010
7LS1|1|m2|A|1011
7LS1|1|m2|G|1012

Current chains

Chain m2

28S rRNA

Nearby chains

Chain F3

40S ribosomal protein S26

Chain N3

40S ribosomal protein S13

Chain p2

40S ribosomal protein S3a