IL_7LS1_261
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 7LS1|1|m2|U|1496, 7LS1|1|m2|G|1499
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_261 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.2245
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7LS1|1|m2|U|1335
7LS1|1|m2|G|1336
7LS1|1|m2|G|1337
*
7LS1|1|m2|U|1494
7LS1|1|m2|C|1495
7LS1|1|m2|U|1496
7LS1|1|m2|G|1497
7LS1|1|m2|U|1498
7LS1|1|m2|G|1499
7LS1|1|m2|A|1500
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain q2
- 40S ribosomal protein S3
- Chain v2
- 40S ribosomal protein S10
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