IL_7LS1_296

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_296 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1262

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7LS1|1|A2|G|2113
7LS1|1|A2|U|2114
7LS1|1|A2|A|2115
7LS1|1|A2|G|2116
7LS1|1|A2|U|2117
7LS1|1|A2|A2M|2118
7LS1|1|A2|OMG|2119
*
7LS1|1|A2|C|3514
7LS1|1|A2|G|3515
7LS1|1|A2|A|3516
7LS1|1|A2|A|3517
7LS1|1|A2|A|3518
7LS1|1|A2|C|3519

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain J2

60S ribosomal protein L17