IL_7LS1_308

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7LS1|1|A2|U|4286, 7LS1|1|A2|PSU|4288

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_308 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.4539

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7LS1|1|A2|U|4284
7LS1|1|A2|G|4285
7LS1|1|A2|U|4286
7LS1|1|A2|A|4287
7LS1|1|A2|PSU|4288
7LS1|1|A2|OMG|4289
*
7LS1|1|A2|C|4314
7LS1|1|A2|G|4315
7LS1|1|A2|A|4316
7LS1|1|A2|A|4317
7LS1|1|A2|G|4318

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain Q2

60S ribosomal protein L24

Chain X2

60S ribosomal protein L31