IL_7LS1_316
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 7LS1|1|m2|G|509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_316 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.2966
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7LS1|1|m2|C|493
7LS1|1|m2|C|494
7LS1|1|m2|A|495
7LS1|1|m2|C|496
7LS1|1|m2|U|497
7LS1|1|m2|C|498
*
7LS1|1|m2|G|508
7LS1|1|m2|G|509
7LS1|1|m2|A|510
7LS1|1|m2|G|511
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain L3
- 40S ribosomal protein S9
- Chain Q3
- 40S ribosomal protein S24
- Chain r2
- 40S ribosomal protein S4, X isoform
Coloring options: