IL_7LS2_029

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUCCGG*CCC

Length

10 nucleotides

Bulged bases

7LS2|1|A2|G|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_029 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.158

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7LS2|1|A2|G|500
7LS2|1|A2|G|501
7LS2|1|A2|U|502
7LS2|1|A2|C|503
7LS2|1|A2|C|504
7LS2|1|A2|G|505
7LS2|1|A2|G|506
*
7LS2|1|A2|C|661
7LS2|1|A2|C|662
7LS2|1|A2|C|663

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain K2

60S ribosomal protein L18