IL_7LS2_042

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(2MG)C*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_042 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1102

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7LS2|1|A2|C|877
7LS2|1|A2|2MG|878
7LS2|1|A2|C|879
*
7LS2|1|A2|G|1089
7LS2|1|A2|C|1090
7LS2|1|A2|G|1091

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6