IL_7LS2_053

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_053 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3206

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_51313.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7LS2|1|A2|G|1238
7LS2|1|A2|G|1239
7LS2|1|A2|A|1240
7LS2|1|A2|U|1241
7LS2|1|A2|C|1242
*
7LS2|1|A2|G|1268
7LS2|1|A2|B8Q|1269
7LS2|1|A2|G|1270
7LS2|1|A2|C|1271
7LS2|1|A2|A|1272
7LS2|1|A2|C|1273

Current chains

Chain A2

28S rRNA

Nearby chains

Chain K2

60S ribosomal protein L18

Chain V2

60S ribosomal protein L29