IL_7LS2_057

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

7LS2|1|A2|C|1298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_057 not in the Motif Atlas

Geometric match to IL_5J7L_311

Geometric discrepancy: 0.3713

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7LS2|1|A2|G|1292
7LS2|1|A2|C|1293
*
7LS2|1|A2|G|1297
7LS2|1|A2|C|1298
7LS2|1|A2|C|1299

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain c2

60S ribosomal protein L36