IL_7LS2_101

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7LS2|1|A2|A|2480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_101 not in the Motif Atlas

Homologous match to IL_8C3A_075

Geometric discrepancy: 0.1801

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7LS2|1|A2|C|2368
7LS2|1|A2|C|2369
*
7LS2|1|A2|G|2479
7LS2|1|A2|A|2480
7LS2|1|A2|G|2481

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain a2

60S ribosomal protein L34