IL_7LS2_111

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7LS2|1|A2|G|3495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_111 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1902

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7LS2|1|A2|A|2605
7LS2|1|A2|G|2606
7LS2|1|A2|U|2607
7LS2|1|A2|C|2608
7LS2|1|A2|G|2609
7LS2|1|A2|G|2610
*
7LS2|1|A2|C|3493
7LS2|1|A2|U|3494
7LS2|1|A2|G|3495
7LS2|1|A2|U|3496

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain P2

60S ribosomal protein L23