IL_7LS2_149

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7LS2|1|A2|G|4174, 7LS2|1|A2|A|4175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_149 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1501

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7LS2|1|A2|C|4108
7LS2|1|A2|U|4109
7LS2|1|A2|C|4110
*
7LS2|1|A2|G|4172
7LS2|1|A2|U|4173
7LS2|1|A2|G|4174
7LS2|1|A2|A|4175
7LS2|1|A2|G|4176

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain P2

60S ribosomal protein L23