IL_7LS2_163

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7LS2|1|A2|A|4360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_163 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2383

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7LS2|1|A2|G|4332
7LS2|1|A2|A|4333
7LS2|1|A2|U|4334
7LS2|1|A2|U|4335
7LS2|1|A2|A|4336
7LS2|1|A2|U|4337
*
7LS2|1|A2|A|4357
7LS2|1|A2|G|4358
7LS2|1|A2|A|4359
7LS2|1|A2|A|4360
7LS2|1|A2|U|4361
7LS2|1|A2|C|4362

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain I2

60S ribosomal protein L13a

Chain g2

Ubiquitin-60S ribosomal protein L40