IL_7LS2_165

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGCC*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_165 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3848

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7LS2|1|A2|G|4395
7LS2|1|A2|A|4396
7LS2|1|A2|G|4397
7LS2|1|A2|C|4398
7LS2|1|A2|C|4399
*
7LS2|1|A2|G|4599
7LS2|1|A2|G|4600
7LS2|1|A2|A|4601
7LS2|1|A2|A|4602
7LS2|1|A2|C|4603

Current chains

Chain A2

28S rRNA

Nearby chains

Chain Z2

60S ribosomal protein L35a