IL_7LS2_178

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_178 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1366

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS2|1|A2|G|4638
7LS2|1|A2|G|4639
7LS2|1|A2|G|4640
*
7LS2|1|A2|C|4703
7LS2|1|A2|A|4704
7LS2|1|A2|C|4705

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain X2

60S ribosomal protein L31