IL_7LS2_193

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_193 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1403

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7LS2|1|m2|U|26
7LS2|1|m2|A2M|27
7LS2|1|m2|U|28
*
7LS2|1|m2|G|648
7LS2|1|m2|U|649
7LS2|1|m2|A|650

Current chains

Chain m2

18S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain L3

40S ribosomal protein S9