IL_7LS2_195
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 7LS2|1|m2|A|518
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_195 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.334
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
7LS2|1|m2|C|37
7LS2|1|m2|A|38
7LS2|1|m2|A|39
7LS2|1|m2|A|40
*
7LS2|1|m2|U|516
7LS2|1|m2|G|517
7LS2|1|m2|A|518
7LS2|1|m2|OMC|519
7LS2|1|m2|G|520
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain L3
- 40S ribosomal protein S9
- Chain Q3
- 40S ribosomal protein S24
- Chain m
- Elongation factor 2
- Chain r2
- 40S ribosomal protein S4, X isoform
Coloring options: