IL_7LS2_200

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_200 not in the Motif Atlas

Geometric match to IL_1ZX7_006

Geometric discrepancy: 0.1843

The information below is about IL_1ZX7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

7LS2|1|m2|G|108
7LS2|1|m2|U|109
7LS2|1|m2|U|110
*
7LS2|1|m2|G|353
7LS2|1|m2|U|354
7LS2|1|m2|C|355

Current chains

Chain m2

18S rRNA

Nearby chains

Chain r2

40S ribosomal protein S4, X isoform

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11