IL_7LS2_201

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

7LS2|1|m2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_201 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.5421

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

7LS2|1|m2|U|110
7LS2|1|m2|A|111
7LS2|1|m2|U|112
7LS2|1|m2|G|113
7LS2|1|m2|G|114
7LS2|1|m2|U|115
*
7LS2|1|m2|A|350
7LS2|1|m2|A|351
7LS2|1|m2|C|352
7LS2|1|m2|G|353

Current chains

Chain m2

18S rRNA

Nearby chains

Chain r2

40S ribosomal protein S4, X isoform

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11