IL_7LS2_212

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_212 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2826

The information below is about IL_4V88_406

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7LS2|1|m2|C|461
7LS2|1|m2|A|462
7LS2|1|m2|U|463
*
7LS2|1|m2|A|470
7LS2|1|m2|A|471
7LS2|1|m2|G|472

Current chains

Chain m2

18S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain P2

60S ribosomal protein L23

Chain m

Elongation factor 2