IL_7LS2_214

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_214 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.23

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7LS2|1|m2|C|493
7LS2|1|m2|C|494
7LS2|1|m2|A|495
7LS2|1|m2|C|496
7LS2|1|m2|U|497
*
7LS2|1|m2|A|510
7LS2|1|m2|G|511

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24

Chain r2

40S ribosomal protein S4, X isoform