IL_7LS2_216

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

7LS2|1|m2|A|556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_216 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.3627

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7LS2|1|m2|U|532
7LS2|1|m2|A|533
*
7LS2|1|m2|U|555
7LS2|1|m2|A|556
7LS2|1|m2|A|557

Current chains

Chain m2

18S rRNA

Nearby chains

Chain T3

40S ribosomal protein S30