IL_7LS2_221
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_221 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.211
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
7LS2|1|m2|A|601
7LS2|1|m2|G|602
7LS2|1|m2|G|603
7LS2|1|m2|G|604
7LS2|1|m2|C|605
7LS2|1|m2|A|606
7LS2|1|m2|A|607
7LS2|1|m2|G|608
*
7LS2|1|m2|C|638
7LS2|1|m2|U|639
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain J3
- 40S ribosomal protein S2
- Chain L3
- 40S ribosomal protein S9
- Chain T3
- 40S ribosomal protein S30
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