IL_7LS2_222

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7LS2|1|m2|U|609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_222 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.1983

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

7LS2|1|m2|G|608
7LS2|1|m2|U|609
7LS2|1|m2|C|610
*
7LS2|1|m2|G|637
7LS2|1|m2|C|638

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A

Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein

Chain L3

40S ribosomal protein S9

Chain T3

40S ribosomal protein S30

Chain q2

40S ribosomal protein S3