IL_7LS2_237

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_237 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3144

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7LS2|1|m2|C|929
7LS2|1|m2|G|930
7LS2|1|m2|G|931
7LS2|1|m2|C|932
7LS2|1|m2|C|933
*
7LS2|1|m2|G|1012
7LS2|1|m2|A|1013
7LS2|1|m2|A|1014
7LS2|1|m2|U|1015
7LS2|1|m2|G|1016

Current chains

Chain m2

18S rRNA

Nearby chains

Chain N3

40S ribosomal protein S13

Chain S3

40S ribosomal protein S27-like

Chain p2

40S ribosomal protein S3a