IL_7LS2_240
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 7LS2|1|m2|G|972
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_240 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1967
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7LS2|1|m2|G|954
7LS2|1|m2|C|955
7LS2|1|m2|U|956
7LS2|1|m2|A|957
7LS2|1|m2|G|958
*
7LS2|1|m2|C|969
7LS2|1|m2|U|970
7LS2|1|m2|U|971
7LS2|1|m2|G|972
7LS2|1|m2|G|973
7LS2|1|m2|A|974
7LS2|1|m2|C|975
7LS2|1|m2|C|976
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain O3
- 40S ribosomal protein S14
- Chain p2
- 40S ribosomal protein S3a
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