IL_7LS2_263

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7LS2|1|m2|C|1405, 7LS2|1|m2|U|1406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_263 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2499

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7LS2|1|m2|A|1404
7LS2|1|m2|C|1405
7LS2|1|m2|U|1406
7LS2|1|m2|A|1407
*
7LS2|1|m2|U|1443
7LS2|1|m2|U|1444
7LS2|1|m2|C|1445
7LS2|1|m2|U|1446

Current chains

Chain m2

18S rRNA

Nearby chains

Chain C3

40S ribosomal protein S20

Chain y2

40S ribosomal protein S16