IL_7LS2_264

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7LS2|1|m2|C|1436, 7LS2|1|m2|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_264 not in the Motif Atlas

Geometric match to IL_3R2D_001

Geometric discrepancy: 0.1723

The information below is about IL_3R2D_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.1

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7LS2|1|m2|U|1410
7LS2|1|m2|A|1411
*
7LS2|1|m2|U|1434
7LS2|1|m2|C|1435
7LS2|1|m2|C|1436
7LS2|1|m2|C|1437
7LS2|1|m2|C|1438
7LS2|1|m2|C|1439
7LS2|1|m2|A|1440

Current chains

Chain m2

18S rRNA

Nearby chains

Chain C3

40S ribosomal protein S20

Chain y2

40S ribosomal protein S16