IL_7LS2_267

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_267 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1206

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

7LS2|1|m2|A|1539
7LS2|1|m2|C|1540
7LS2|1|m2|U|1541
*
7LS2|1|m2|A|1596
7LS2|1|m2|U|1597
7LS2|1|m2|U|1598

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A3

40S ribosomal protein S18

Chain B3

40S ribosomal protein S19

Chain R3

40S ribosomal protein S25

Chain s2

40S ribosomal protein S5