IL_7LS2_269

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7LS2|1|m2|C|1703, 7LS2|1|m2|A|1837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_269 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1745

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7LS2|1|m2|C|1702
7LS2|1|m2|C|1703
7LS2|1|m2|G|1704
*
7LS2|1|m2|C|1835
7LS2|1|m2|A|1836
7LS2|1|m2|A|1837
7LS2|1|m2|G|1838

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A

Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein

Chain F3

40S ribosomal protein S26

Chain n2

Transfer RNA; tRNA