IL_7LS2_277

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_277 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.2053

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7LS2|1|m2|U|1735
7LS2|1|m2|G|1736
7LS2|1|m2|A|1737
7LS2|1|m2|G|1738
*
7LS2|1|m2|C|1800
7LS2|1|m2|G|1801
7LS2|1|m2|A|1802
7LS2|1|m2|A|1803

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain K3

40S ribosomal protein S6

Chain P2

60S ribosomal protein L23

Chain Q2

60S ribosomal protein L24

Chain u

40S ribosomal protein S8