IL_7LS2_279

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_279 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2394

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7LS2|1|m2|C|1744
7LS2|1|m2|G|1745
7LS2|1|m2|G|1746
7LS2|1|m2|A|1747
7LS2|1|m2|U|1748
*
7LS2|1|m2|A|1790
7LS2|1|m2|G|1791
7LS2|1|m2|A|1792
7LS2|1|m2|A|1793
7LS2|1|m2|G|1794

Current chains

Chain m2

18S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain Q2

60S ribosomal protein L24

Chain u

40S ribosomal protein S8