IL_7LS2_282

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUC*GUC

Length

7 nucleotides

Bulged bases

7LS2|1|A2|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_282 not in the Motif Atlas

Geometric match to IL_8C3A_149

Geometric discrepancy: 0.161

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7LS2|1|A2|G|11
7LS2|1|A2|A|12
7LS2|1|A2|U|13
7LS2|1|A2|C|14
*
7LS2|1|C2|G|143
7LS2|1|C2|U|144
7LS2|1|C2|C|145

Current chains

Chain A2

28S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain H1

60S ribosomal protein L15

Chain R2

60S ribosomal protein L23a