IL_7LS2_292
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7LS2|1|A2|A|1463, 7LS2|1|A2|G|1467
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_292 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.105
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7LS2|1|A2|OMG|1335
7LS2|1|A2|A|1336
7LS2|1|A2|A2M|1337
7LS2|1|A2|A|1338
7LS2|1|A2|G|1339
*
7LS2|1|A2|C|1461
7LS2|1|A2|U|1462
7LS2|1|A2|A|1463
7LS2|1|A2|G|1464
7LS2|1|A2|U|1465
7LS2|1|A2|A|1466
7LS2|1|A2|G|1467
7LS2|1|A2|C|1468
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain U2
- 60S ribosomal protein L27a
- Chain d2
- 60S ribosomal protein L37
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