IL_7LS2_310

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7LS2|1|A2|U|4089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_310 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2119

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7LS2|1|A2|G|4057
7LS2|1|A2|U|4058
7LS2|1|A2|G|4059
*
7LS2|1|A2|U|4087
7LS2|1|A2|U|4088
7LS2|1|A2|U|4089
7LS2|1|A2|U|4090
7LS2|1|A2|U|4091

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

60S ribosomal protein L10-like

Chain E2

60S ribosomal protein L3