IL_7LS2_326

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACCGC*GAGGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_326 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.315

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7LS2|1|m2|G|876
7LS2|1|m2|A|877
7LS2|1|m2|C|878
7LS2|1|m2|C|879
7LS2|1|m2|G|880
7LS2|1|m2|C|881
*
7LS2|1|m2|G|909
7LS2|1|m2|A|910
7LS2|1|m2|G|911
7LS2|1|m2|G|912
7LS2|1|m2|C|913
7LS2|1|m2|C|914

Current chains

Chain m2

18S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain t

40S ribosomal protein S7

Chain w2

40S ribosomal protein S11