IL_7LS2_327

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7LS2|1|m2|U|1018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_327 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2753

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

7LS2|1|m2|G|927
7LS2|1|m2|A|928
*
7LS2|1|m2|U|1017
7LS2|1|m2|U|1018
7LS2|1|m2|U|1019

Current chains

Chain m2

18S rRNA

Nearby chains

Chain N3

40S ribosomal protein S13

Chain S3

40S ribosomal protein S27-like