IL_7LS2_343
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_343 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.4207
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.4
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
7LS2|1|m2|G|809
7LS2|1|m2|A|810
7LS2|1|m2|A|811
7LS2|1|m2|A|812
7LS2|1|m2|A|813
7LS2|1|m2|A|814
7LS2|1|m2|A|815
7LS2|1|m2|U|816
7LS2|1|m2|U|817
*
7LS2|1|m2|A|851
7LS2|1|m2|C|852
7LS2|1|m2|C|853
7LS2|1|m2|G|854
7LS2|1|m2|C|855
7LS2|1|m2|A|856
7LS2|1|m2|G|857
7LS2|1|m2|C|858
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain L3
- 40S ribosomal protein S9
- Chain P3
- 40S ribosomal protein S15a
- Chain r2
- 40S ribosomal protein S4, X isoform
- Chain w2
- 40S ribosomal protein S11
Coloring options: