IL_7LV0_141

3D structure

PDB id

7LV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7LV0|1|3|A|532, 7LV0|1|3|U|534, 7LV0|1|3|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LV0_141 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1756

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7LV0|1|3|G|515
7LV0|1|3|U|516
7LV0|1|3|G|517
7LV0|1|3|C|518
7LV0|1|3|C|519
7LV0|1|3|A|520
7LV0|1|3|G|521
*
7LV0|1|3|C|528
7LV0|1|3|G|529
7LV0|1|3|G|530
7LV0|1|3|U|531
7LV0|1|3|A|532
7LV0|1|3|A|533
7LV0|1|3|U|534
7LV0|1|3|A|535
7LV0|1|3|C|536

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain H

30S ribosomal protein S3

Chain I

30S ribosomal protein S4

Chain Q

30S ribosomal protein S12