3D structure

PDB id
7LVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified 50S subunit from Escherichia coli
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
7LVK|1|I|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7LVK_033 not in the Motif Atlas
Homologous match to IL_4WF9_036
Geometric discrepancy: 0.0555
The information below is about IL_4WF9_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

7LVK|1|I|C|998
7LVK|1|I|U|999
7LVK|1|I|A|1000
7LVK|1|I|A|1001
7LVK|1|I|G|1002
*
7LVK|1|I|C|1153
7LVK|1|I|G|1154
7LVK|1|I|A|1155
7LVK|1|I|A|1156
7LVK|1|I|G|1157

Current chains

Chain I
23S rRNA

Nearby chains

Chain J
5S ribosomal RNA; 5S rRNA
Chain Y
50S ribosomal protein L20
Chain Z
50S ribosomal protein L21
Chain h
50S ribosomal protein L30

Coloring options:


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