IL_7LVK_100

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7LVK|1|I|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_100 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0672

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7LVK|1|I|C|2636
7LVK|1|I|U|2637
7LVK|1|I|G|2638
7LVK|1|I|A|2639
7LVK|1|I|G|2640
*
7LVK|1|I|C|2774
7LVK|1|I|G|2775
7LVK|1|I|A|2776
7LVK|1|I|G|2777
7LVK|1|I|A|2778
7LVK|1|I|U|2779
7LVK|1|I|G|2780
7LVK|1|I|A|2781
7LVK|1|I|G|2782

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

50S ribosomal protein L13