IL_7M4W_134
3D structure
- PDB id
- 7M4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-Eravacycline complex: 70S Empty
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7M4W|1|a|A|529, 7M4W|1|a|U|531, 7M4W|1|a|A|532
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7M4W_134 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2443
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7M4W|1|a|G|512
7M4W|1|a|PSU|513
7M4W|1|a|G|514
7M4W|1|a|C|515
7M4W|1|a|C|516
7M4W|1|a|A|517
7M4W|1|a|G|518
*
7M4W|1|a|C|525
7M4W|1|a|G|526
7M4W|1|a|G|527
7M4W|1|a|U|528
7M4W|1|a|A|529
7M4W|1|a|A|530
7M4W|1|a|U|531
7M4W|1|a|A|532
7M4W|1|a|C|533
Current chains
- Chain a
- 16s Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: