IL_7M4W_144

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7M4W|1|a|A|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4W_144 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1248

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7M4W|1|a|U|681
7M4W|1|a|G|682
7M4W|1|a|U|683
7M4W|1|a|A|684
7M4W|1|a|G|685
*
7M4W|1|a|C|696
7M4W|1|a|G|697
7M4W|1|a|U|698
7M4W|1|a|A|699
7M4W|1|a|G|700
7M4W|1|a|A|701
7M4W|1|a|G|702
7M4W|1|a|A|703

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11