IL_7M4X_070

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*CCUG

Length

16 nucleotides

Bulged bases

7M4X|1|A|A|1934, 7M4X|1|A|U|1940, 7M4X|1|A|U|1959

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4X_070 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1507

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7M4X|1|A|C|1930
7M4X|1|A|G|1931
7M4X|1|A|A|1932
7M4X|1|A|A|1933
7M4X|1|A|A|1934
7M4X|1|A|5MU|1935
7M4X|1|A|U|1936
7M4X|1|A|C|1937
7M4X|1|A|C|1938
7M4X|1|A|U|1939
7M4X|1|A|U|1940
7M4X|1|A|G|1941
*
7M4X|1|A|C|1957
7M4X|1|A|C|1958
7M4X|1|A|U|1959
7M4X|1|A|G|1960

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA