IL_7M4Z_004

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

7M4Z|1|A|U|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_004 not in the Motif Atlas

Geometric match to IL_6UFG_001

Geometric discrepancy: 0.1656

The information below is about IL_6UFG_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7M4Z|1|A|G|88
7M4Z|1|A|G|89
7M4Z|1|A|G|90
7M4Z|1|A|A|91
7M4Z|1|A|G|92
*
7M4Z|1|A|C|105
7M4Z|1|A|U|106
7M4Z|1|A|U|107
7M4Z|1|A|U|108
7M4Z|1|A|G|109
7M4Z|1|A|A|110
7M4Z|1|A|U|111
7M4Z|1|A|C|112

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24

Chain X

50S ribosomal protein L29