IL_7M4Z_007

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1051

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7M4Z|1|A|U|246
7M4Z|1|A|C|247
7M4Z|1|A|A|248
7M4Z|1|A|G|249
7M4Z|1|A|U|250
7M4Z|1|A|A|251
7M4Z|1|A|G|252
*
7M4Z|1|A|C|260
7M4Z|1|A|G|261
7M4Z|1|A|A|262
7M4Z|1|A|A|263
7M4Z|1|A|C|264
7M4Z|1|A|G|265

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain K

50S ribosomal protein L15