IL_7M4Z_017

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7M4Z|1|A|G|799, 7M4Z|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1236

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7M4Z|1|A|G|672
7M4Z|1|A|A|673
7M4Z|1|A|A|674
7M4Z|1|A|A|675
7M4Z|1|A|C|676
*
7M4Z|1|A|G|797
7M4Z|1|A|U|798
7M4Z|1|A|G|799
7M4Z|1|A|A|800
7M4Z|1|A|U|801
7M4Z|1|A|A|802
7M4Z|1|A|G|803
7M4Z|1|A|C|804

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15